HL_2L1V_014

3D structure

PDB id

2L1V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution structure of a preQ1 riboswitch (Class I) aptamer bound to preQ1

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GUUCUAGUUAUACC

Length

14 nucleotides

Bulged bases

2L1V|14|A|U|15

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2L1V_014 not in the Motif Atlas

Geometric match to HL_8FZA_001

Geometric discrepancy: 0.3786

The information below is about HL_8FZA_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51121.1

Basepair signature

cWW-F-F-F-F-cSH-F-F-F

Number of instances in this motif group

2

Unit IDs

2L1V|14|A|G|7
2L1V|14|A|U|8
2L1V|14|A|U|9
2L1V|14|A|C|10
2L1V|14|A|U|11
2L1V|14|A|A|12
2L1V|14|A|G|13
2L1V|14|A|U|14
2L1V|14|A|U|15
2L1V|14|A|A|16
2L1V|14|A|U|17
2L1V|14|A|A|18
2L1V|14|A|C|19
2L1V|14|A|C|20

Current chains

Chain A

36-MER

Nearby chains