HL_2M4Q_003

3D structure

PDB id

2M4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMR structure of E. coli ribosomela decoding site with apramycin

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CCUUCGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2M4Q_003 not in the Motif Atlas

Geometric match to HL_6CF2_001

Geometric discrepancy: 0.3777

The information below is about HL_6CF2_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46211.1

Basepair signature

cWW-cWW-tSW-F

Number of instances in this motif group

10

Unit IDs

2M4Q|3|1|C|10
2M4Q|3|1|C|11
2M4Q|3|1|U|12
2M4Q|3|1|U|13
2M4Q|3|1|C|14
2M4Q|3|1|G|15
2M4Q|3|1|G|16
2M4Q|3|1|G|17

Current chains

Chain 1

RNA (27-MER)

Nearby chains