HL_2MXS_004

3D structure

PDB id

2MXS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution NMR-structure of the neomycin sensing riboswitch RNA bound to paromomycin

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CUUUAAUG

Length

8 nucleotides

Bulged bases

2MXS|4|A|A|17

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2MXS_004 not in the Motif Atlas

Geometric match to HL_4LFB_025

Geometric discrepancy: 0.2484

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

22

Unit IDs

2MXS|4|A|C|12
2MXS|4|A|U|13
2MXS|4|A|U|14
2MXS|4|A|U|15
2MXS|4|A|A|16
2MXS|4|A|A|17
2MXS|4|A|U|18
2MXS|4|A|G|19

Current chains

Chain A

RNA (27-MER)

Nearby chains