2MXS Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_2MXS_001 | 1/A/12:19 | No text annotation | geometric HL_4V88_215 NA | |
| HL_2MXS_002 | 2/A/12:19 | No text annotation | geometric HL_4V88_215 NA | |
| HL_2MXS_003 | 3/A/12:19 | T-loop related | geometric HL_4LFB_025 HL_63894.3 | |
| HL_2MXS_004 | 4/A/12:19 | T-loop related | geometric HL_4LFB_025 HL_63894.3 | |
| HL_2MXS_005 | 5/A/12:19 | No text annotation | geometric HL_4V88_215 NA | |
| HL_2MXS_006 | 6/A/12:19 | No text annotation | geometric HL_4V88_215 NA | |
| HL_2MXS_007 | 7/A/12:19 | No text annotation | geometric HL_5TBW_008 NA | |
| HL_2MXS_008 | 8/A/12:19 | No text annotation | geometric HL_4V88_215 NA | |
| HL_2MXS_009 | 9/A/12:19 | No text annotation | geometric HL_4V88_215 NA | |
| HL_2MXS_010 | 10/A/12:19 | No text annotation | geometric HL_5TBW_008 NA | |
| HL_2MXS_011 | 11/A/12:19 | No text annotation | geometric HL_4V88_215 NA | |
| HL_2MXS_012 | 12/A/12:19 | No text annotation | geometric HL_5TBW_024 NA | |
| HL_2MXS_013 | 13/A/12:19 | No text annotation | geometric HL_4V88_215 NA | |
| HL_2MXS_014 | 14/A/12:19 | T-loop related | geometric HL_5J7L_024 NA | |
| HL_2MXS_015 | 15/A/12:19 | No text annotation | geometric HL_4V88_215 NA | |
| HL_2MXS_016 | 16/A/12:19 | No text annotation | geometric HL_5TBW_024 NA | |
| HL_2MXS_017 | 17/A/12:19 | No text annotation | geometric HL_4V88_215 NA | |
| HL_2MXS_018 | 18/A/12:19 | No text annotation | geometric HL_4V88_215 NA | |
| HL_2MXS_019 | 19/A/12:19 | No text annotation | geometric HL_5TBW_008 NA | |
| HL_2MXS_020 | 20/A/12:19 | No text annotation | geometric HL_5TBW_008 NA |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_2MXS_001 | 1/A/5:9, 1/A/22:23 | Major groove intercalation | geometric IL_1U9S_003 IL_71421.4 | |
| IL_2MXS_002 | 1/A/9:11, 1/A/20:22 | Isolated non-canonical cWW pair | geometric IL_5J7L_050 NA | |
| IL_2MXS_003 | 2/A/5:9, 2/A/22:23 | Major groove intercalation | geometric IL_1U9S_003 IL_71421.4 | |
| IL_2MXS_004 | 2/A/9:11, 2/A/20:22 | Isolated non-canonical cWW pair | geometric IL_3MEI_002 IL_01003.5 | |
| IL_2MXS_005 | 3/A/5:9, 3/A/22:23 | Multiple bulged bases | geometric IL_1R3E_002 IL_05670.1 | |
| IL_2MXS_006 | 3/A/9:11, 3/A/20:22 | Isolated non-canonical cWW pair | geometric IL_5J7L_050 NA | |
| IL_2MXS_007 | 4/A/5:9, 4/A/22:23 | Major groove intercalation | geometric IL_1U9S_003 IL_71421.4 | |
| IL_2MXS_008 | 4/A/9:11, 4/A/20:22 | Isolated non-canonical cWW pair | geometric IL_5J7L_050 NA | |
| IL_2MXS_009 | 5/A/5:9, 5/A/22:23 | Multiple bulged bases | geometric IL_4V88_392 NA | |
| IL_2MXS_010 | 5/A/9:11, 5/A/20:22 | Isolated non-canonical cWW pair | geometric IL_5J7L_050 NA | |
| IL_2MXS_011 | 6/A/5:9, 6/A/22:23 | Major groove intercalation | geometric IL_1U9S_003 IL_71421.4 | |
| IL_2MXS_012 | 6/A/9:11, 6/A/20:22 | Isolated non-canonical cWW pair | geometric IL_3MEI_002 IL_01003.5 | |
| IL_2MXS_013 | 7/A/5:9, 7/A/22:23 | Multiple bulged bases | geometric IL_6JXM_001 IL_05670.1 | |
| IL_2MXS_014 | 7/A/9:11, 7/A/20:22 | Isolated non-canonical cWW pair | geometric IL_5J7L_050 NA | |
| IL_2MXS_015 | 8/A/5:9, 8/A/22:23 | Multiple bulged bases | geometric IL_6JXM_001 IL_05670.1 | |
| IL_2MXS_016 | 8/A/9:11, 8/A/20:22 | Isolated non-canonical cWW pair | geometric IL_3MEI_002 IL_01003.5 | |
| IL_2MXS_017 | 9/A/5:9, 9/A/22:23 | Multiple bulged bases | geometric IL_6JXM_001 IL_05670.1 | |
| IL_2MXS_018 | 9/A/9:11, 9/A/20:22 | Isolated non-canonical cWW pair | geometric IL_5J7L_050 NA | |
| IL_2MXS_019 | 10/A/5:9, 10/A/22:23 | Major groove intercalation | geometric IL_1U9S_003 IL_71421.4 | |
| IL_2MXS_020 | 10/A/9:11, 10/A/20:22 | Isolated non-canonical cWW pair | geometric IL_5J7L_050 NA | |
| IL_2MXS_021 | 11/A/5:9, 11/A/22:23 | Multiple bulged bases | geometric IL_6JXM_001 IL_05670.1 | |
| IL_2MXS_022 | 11/A/9:11, 11/A/20:22 | Isolated non-canonical cWW pair | geometric IL_5J7L_050 NA | |
| IL_2MXS_023 | 12/A/5:9, 12/A/22:23 | Major groove intercalation | geometric IL_1U9S_003 IL_71421.4 | |
| IL_2MXS_024 | 12/A/9:11, 12/A/20:22 | Isolated non-canonical cWW pair | geometric IL_5J7L_050 NA | |
| IL_2MXS_025 | 13/A/5:9, 13/A/22:23 | Multiple bulged bases | geometric IL_6JXM_001 IL_05670.1 | |
| IL_2MXS_026 | 13/A/9:11, 13/A/20:22 | Isolated non-canonical cWW pair | geometric IL_5TBW_112 NA | |
| IL_2MXS_027 | 14/A/5:9, 14/A/22:23 | Major groove platform | geometric IL_3SUX_002 IL_48076.9 | |
| IL_2MXS_028 | 14/A/9:11, 14/A/20:22 | Isolated non-canonical cWW pair | geometric IL_3MEI_002 IL_01003.5 | |
| IL_2MXS_029 | 15/A/5:9, 15/A/22:23 | Multiple bulged bases | geometric IL_6JXM_001 IL_05670.1 | |
| IL_2MXS_030 | 15/A/9:11, 15/A/20:22 | Isolated non-canonical cWW pair | geometric IL_3MEI_002 IL_01003.5 | |
| IL_2MXS_031 | 16/A/5:9, 16/A/22:23 | Major groove intercalation | geometric IL_1U9S_003 IL_71421.4 | |
| IL_2MXS_032 | 16/A/9:11, 16/A/20:22 | Isolated non-canonical cWW pair | geometric IL_5J7L_050 NA | |
| IL_2MXS_033 | 17/A/5:9, 17/A/22:23 | Major groove intercalation | geometric IL_1U9S_003 IL_71421.4 | |
| IL_2MXS_034 | 17/A/9:11, 17/A/20:22 | Isolated non-canonical cWW pair | geometric IL_3MEI_002 IL_01003.5 | |
| IL_2MXS_035 | 18/A/5:9, 18/A/22:23 | Major groove intercalation | geometric IL_1U9S_003 IL_71421.4 | |
| IL_2MXS_036 | 18/A/9:11, 18/A/20:22 | Isolated non-canonical cWW pair | geometric IL_3MEI_002 IL_01003.5 | |
| IL_2MXS_037 | 19/A/5:9, 19/A/22:23 | Major groove intercalation | geometric IL_1U9S_003 IL_71421.4 | |
| IL_2MXS_038 | 19/A/9:11, 19/A/20:22 | Isolated non-canonical cWW pair | geometric IL_5CCB_001 IL_01003.5 | |
| IL_2MXS_039 | 20/A/5:9, 20/A/22:23 | Multiple bulged bases | geometric IL_6JXM_001 IL_05670.1 | |
| IL_2MXS_040 | 20/A/9:11, 20/A/20:22 | Isolated non-canonical cWW pair | geometric IL_5J7L_050 NA |
Problematic loops
No problematic loops
Valid loops
No loops found
Problematic loops
No problematic loops
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