HL_2NRE_004

3D structure

PDB id

2NRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

GGAAUUGGUAGAC

Length

13 nucleotides

Bulged bases

2NRE|1|F|U|16||||5_555, 2NRE|1|F|U|17||||5_555, 2NRE|1|F|G|18||||5_555, 2NRE|1|F|G|19||||5_555, 2NRE|1|F|U|20||||5_555

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2NRE_004 not in the Motif Atlas

Geometric match to HL_3ZGZ_001

Geometric discrepancy: 0.2637

The information below is about HL_3ZGZ_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_18470.2

Basepair signature

cWW-cWS-tSH-cWS-F

Number of instances in this motif group

7

Unit IDs

2NRE|1|F|G|12||||5_555
2NRE|1|F|G|13||||5_555
2NRE|1|F|A|14||||5_555
2NRE|1|F|A|15||||5_555
2NRE|1|F|U|16||||5_555
2NRE|1|F|U|17||||5_555
2NRE|1|F|G|18||||5_555
2NRE|1|F|G|19||||5_555
2NRE|1|F|U|20||||5_555
2NRE|1|F|A|20|||A|5_555
2NRE|1|F|G|21||||5_555
2NRE|1|F|A|22||||5_555
2NRE|1|F|C|23||||5_555

Current chains

Chain F

leucyl tRNA

Nearby chains

Chain A

tRNA pseudouridine synthase A