HL_2O32_002

3D structure

PDB id

2O32 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution structure of U2 snRNA stem I from human, containing modified nucleotides

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CC(PSU)UUU(OMG)G

Length

8 nucleotides

Bulged bases

2O32|2|A|U|10, 2O32|2|A|U|11

QA status

Modified nucleotides: PSU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2O32_002 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.2311

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

2O32|2|A|C|7
2O32|2|A|C|8
2O32|2|A|PSU|9
2O32|2|A|U|10
2O32|2|A|U|11
2O32|2|A|U|12
2O32|2|A|OMG|13
2O32|2|A|G|14

Current chains

Chain A

5'-R(*(PSU)P*CP*UP*CP*(OMG)P*(OMG)P*CP*CP*(PSU)P*UP*UP*UP*(OMG)P*GP*CP*UP*AP*AP*(OMG)P*A)-3'

Nearby chains