HL_2O44_065

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

2O44|1|A|A|2730, 2O44|1|A|G|2731, 2O44|1|A|C|2735, 2O44|1|A|A|2737

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2O44_065 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.3207

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

2O44|1|A|C|2725
2O44|1|A|U|2726
2O44|1|A|G|2727
2O44|1|A|A|2728
2O44|1|A|A|2729
2O44|1|A|A|2730
2O44|1|A|G|2731
2O44|1|A|C|2732
2O44|1|A|A|2733
2O44|1|A|U|2734
2O44|1|A|C|2735
2O44|1|A|U|2736
2O44|1|A|A|2737
2O44|1|A|A|2738
2O44|1|A|G|2739

Current chains

Chain A

23S rRNA

Nearby chains