HL_2OGO_011

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

GUGAGAGUC

Length

9 nucleotides

Bulged bases

2OGO|1|0|G|340

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2OGO_011 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.2918

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

2OGO|1|0|G|338
2OGO|1|0|U|339
2OGO|1|0|G|340
2OGO|1|0|A|341
2OGO|1|0|G|342
2OGO|1|0|A|343
2OGO|1|0|G|344
2OGO|1|0|U|345
2OGO|1|0|C|346

Current chains

Chain 0

23S ribosomal RNA

Nearby chains