HL_2OGO_022

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

UGCUGAAACA

Length

10 nucleotides

Bulged bases

2OGO|1|0|U|760, 2OGO|1|0|A|764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2OGO_022 not in the Motif Atlas

Homologous match to HL_8VTW_022

Geometric discrepancy: 0.3777

The information below is about HL_8VTW_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

2OGO|1|0|U|757
2OGO|1|0|G|758
2OGO|1|0|C|759
2OGO|1|0|U|760
2OGO|1|0|G|761
2OGO|1|0|A|762
2OGO|1|0|A|763
2OGO|1|0|A|764
2OGO|1|0|C|765
2OGO|1|0|A|766

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3