HL_2OGO_028

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

2OGO|1|0|A|1081

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2OGO_028 not in the Motif Atlas

Homologous match to HL_6PRV_001

Geometric discrepancy: 0.4999

The information below is about HL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20174.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

2OGO|1|0|C|1075
2OGO|1|0|U|1076
2OGO|1|0|U|1077
2OGO|1|0|A|1078
2OGO|1|0|G|1079
2OGO|1|0|A|1080
2OGO|1|0|A|1081
2OGO|1|0|G|1082
2OGO|1|0|C|1083
2OGO|1|0|A|1084
2OGO|1|0|G|1085

Current chains

Chain 0

23S ribosomal RNA

Nearby chains