HL_2OGO_032

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2OGO_032 not in the Motif Atlas

Homologous match to HL_7RQB_033

Geometric discrepancy: 0.1827

The information below is about HL_7RQB_033

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41998.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

69

Unit IDs

2OGO|1|0|G|1294
2OGO|1|0|U|1295
2OGO|1|0|G|1296
2OGO|1|0|A|1297
2OGO|1|0|G|1298
2OGO|1|0|A|1299
2OGO|1|0|A|1300
2OGO|1|0|U|1301
2OGO|1|0|C|1302

Current chains

Chain 0

23S ribosomal RNA

Nearby chains