HL_2OGO_045

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

GUUUACCAAAAUC

Length

13 nucleotides

Bulged bases

2OGO|1|0|A|1771, 2OGO|1|0|C|1772, 2OGO|1|0|C|1773, 2OGO|1|0|A|1777

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2OGO_045 not in the Motif Atlas

Homologous match to HL_7A0S_045

Geometric discrepancy: 0.2283

The information below is about HL_7A0S_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50951.2

Basepair signature

cWW-F-F-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

2OGO|1|0|G|1767
2OGO|1|0|U|1768
2OGO|1|0|U|1769
2OGO|1|0|U|1770
2OGO|1|0|A|1771
2OGO|1|0|C|1772
2OGO|1|0|C|1773
2OGO|1|0|A|1774
2OGO|1|0|A|1775
2OGO|1|0|A|1776
2OGO|1|0|A|1777
2OGO|1|0|U|1778
2OGO|1|0|C|1779

Current chains

Chain 0

23S ribosomal RNA

Nearby chains