HL_2OGO_050

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

GUAAAGAUGC

Length

10 nucleotides

Bulged bases

2OGO|1|0|A|2013, 2OGO|1|0|A|2014, 2OGO|1|0|G|2015

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2OGO_050 not in the Motif Atlas

Homologous match to HL_7RQB_050

Geometric discrepancy: 0.193

The information below is about HL_7RQB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

2OGO|1|0|G|2010
2OGO|1|0|U|2011
2OGO|1|0|A|2012
2OGO|1|0|A|2013
2OGO|1|0|A|2014
2OGO|1|0|G|2015
2OGO|1|0|A|2016
2OGO|1|0|U|2017
2OGO|1|0|G|2018
2OGO|1|0|C|2019

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3