HL_2OGO_053

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

CCAAAAUGUAACG

Length

13 nucleotides

Bulged bases

2OGO|1|0|A|2246, 2OGO|1|0|A|2247, 2OGO|1|0|C|2254

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2OGO_053 not in the Motif Atlas

Homologous match to HL_7A0S_053

Geometric discrepancy: 0.2302

The information below is about HL_7A0S_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

13

Unit IDs

2OGO|1|0|C|2243
2OGO|1|0|C|2244
2OGO|1|0|A|2245
2OGO|1|0|A|2246
2OGO|1|0|A|2247
2OGO|1|0|A|2248
2OGO|1|0|U|2249
2OGO|1|0|G|2250
2OGO|1|0|U|2251
2OGO|1|0|A|2252
2OGO|1|0|A|2253
2OGO|1|0|C|2254
2OGO|1|0|G|2255

Current chains

Chain 0

23S ribosomal RNA

Nearby chains