HL_2OGO_058

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

CGUGUGGAAG

Length

10 nucleotides

Bulged bases

2OGO|1|0|U|2385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2OGO_058 not in the Motif Atlas

Homologous match to HL_7A0S_058

Geometric discrepancy: 0.1759

The information below is about HL_7A0S_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51853.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

2OGO|1|0|C|2383
2OGO|1|0|G|2384
2OGO|1|0|U|2385
2OGO|1|0|G|2386
2OGO|1|0|U|2387
2OGO|1|0|G|2388
2OGO|1|0|G|2389
2OGO|1|0|A|2390
2OGO|1|0|A|2391
2OGO|1|0|G|2392

Current chains

Chain 0

23S ribosomal RNA

Nearby chains