HL_2OGO_060

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

UGAAGAAG

Length

8 nucleotides

Bulged bases

2OGO|1|0|G|2508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2OGO_060 not in the Motif Atlas

Homologous match to HL_7A0S_060

Geometric discrepancy: 0.1279

The information below is about HL_7A0S_060

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_46665.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

2OGO|1|0|U|2507
2OGO|1|0|G|2508
2OGO|1|0|A|2509
2OGO|1|0|A|2510
2OGO|1|0|G|2511
2OGO|1|0|A|2512
2OGO|1|0|A|2513
2OGO|1|0|G|2514

Current chains

Chain 0

23S ribosomal RNA

Nearby chains