HL_2OGO_072

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

UCAAUG

Length

6 nucleotides

Bulged bases

2OGO|1|0|U|1651

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2OGO_072 not in the Motif Atlas

Homologous match to HL_7A0S_073

Geometric discrepancy: 0.1726

The information below is about HL_7A0S_073

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

2OGO|1|0|U|1647
2OGO|1|0|C|1648
2OGO|1|0|A|1649
2OGO|1|0|A|1650
2OGO|1|0|U|1651
2OGO|1|0|G|1652

Current chains

Chain 0

23S ribosomal RNA

Nearby chains