HL_2OTJ_031

3D structure

PDB id

2OTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

13-deoxytedanolide bound to the large subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGUAACAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2OTJ_031 not in the Motif Atlas

Homologous match to HL_5D8H_002

Geometric discrepancy: 0.137

The information below is about HL_5D8H_002

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

2OTJ|1|0|C|1196
2OTJ|1|0|G|1197
2OTJ|1|0|U|1198
2OTJ|1|0|A|1199
2OTJ|1|0|A|1200
2OTJ|1|0|C|1201
2OTJ|1|0|A|1202
2OTJ|1|0|G|1203

Current chains

Chain 0

23S ribosomal RNA

Nearby chains