HL_2OTJ_032
3D structure
- PDB id
- 2OTJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 13-deoxytedanolide bound to the large subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- ACUCAUACU
- Length
- 9 nucleotides
- Bulged bases
- 2OTJ|1|0|U|1279
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_2OTJ_032 not in the Motif Atlas
- Homologous match to HL_4V9F_032
- Geometric discrepancy: 0.0593
- The information below is about HL_4V9F_032
- Detailed Annotation
- Anticodon loop related
- Broad Annotation
- Anticodon loop related
- Motif group
- HL_77082.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
2OTJ|1|0|A|1274
2OTJ|1|0|C|1275
2OTJ|1|0|U|1276
2OTJ|1|0|C|1277
2OTJ|1|0|A|1278
2OTJ|1|0|U|1279
2OTJ|1|0|A|1280
2OTJ|1|0|C|1281
2OTJ|1|0|U|1282
Current chains
- Chain 0
- 23S ribosomal RNA
Nearby chains
- Chain O
- 50S ribosomal protein L18e
- Chain Y
- 50S ribosomal protein L32e
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