HL_2OTJ_043

3D structure

PDB id

2OTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

13-deoxytedanolide bound to the large subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGGCGAAAG

Length

9 nucleotides

Bulged bases

2OTJ|1|0|A|1710

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2OTJ_043 not in the Motif Atlas

Homologous match to HL_4V9F_043

Geometric discrepancy: 0.0482

The information below is about HL_4V9F_043

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.1

Basepair signature

cWW-F

Number of instances in this motif group

10

Unit IDs

2OTJ|1|0|C|1705
2OTJ|1|0|G|1706
2OTJ|1|0|G|1707
2OTJ|1|0|C|1708
2OTJ|1|0|G|1709
2OTJ|1|0|A|1710
2OTJ|1|0|A|1711
2OTJ|1|0|A|1712
2OTJ|1|0|G|1713

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L19e