HL_2OTL_043

3D structure

PDB id

2OTL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Girodazole bound to the large subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGGCGAAAG

Length

9 nucleotides

Bulged bases

2OTL|1|0|A|1710

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2OTL_043 not in the Motif Atlas

Homologous match to HL_4V9F_043

Geometric discrepancy: 0.0466

The information below is about HL_4V9F_043

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.1

Basepair signature

cWW-F

Number of instances in this motif group

10

Unit IDs

2OTL|1|0|C|1705
2OTL|1|0|G|1706
2OTL|1|0|G|1707
2OTL|1|0|C|1708
2OTL|1|0|G|1709
2OTL|1|0|A|1710
2OTL|1|0|A|1711
2OTL|1|0|A|1712
2OTL|1|0|G|1713

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L19e