HL_2QEX_031

3D structure

PDB id

2QEX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Negamycin Binds to the Wall of the Nascent Chain Exit Tunnel of the 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGUAACAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2QEX_031 not in the Motif Atlas

Homologous match to HL_5D8H_002

Geometric discrepancy: 0.1491

The information below is about HL_5D8H_002

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

2QEX|1|0|C|1196
2QEX|1|0|G|1197
2QEX|1|0|U|1198
2QEX|1|0|A|1199
2QEX|1|0|A|1200
2QEX|1|0|C|1201
2QEX|1|0|A|1202
2QEX|1|0|G|1203

Current chains

Chain 0

23S ribosomal RNA

Nearby chains