HL_2RPT_007

3D structure

PDB id

2RPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CC mismatch from the thymidylate synthase binding site 1 hairpin and analysis of its interaction with paromomycin

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2RPT_007 not in the Motif Atlas

Geometric match to HL_3P22_001

Geometric discrepancy: 0.1693

The information below is about HL_3P22_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

2RPT|7|A|C|8
2RPT|7|A|G|9
2RPT|7|A|A|10
2RPT|7|A|A|11
2RPT|7|A|A|12
2RPT|7|A|G|13

Current chains

Chain A

RNA (5'-R(*GP*GP*CP*CP*CP*GP*CP*CP*GP*AP*AP*AP*GP*GP*CP*CP*GP*GP*CP*C)-3')

Nearby chains