HL_2UXB_017

3D structure

PDB id

2UXB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA GGGU in the context of the Thermus thermophilus 30S subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAUUAGAUACC

Length

11 nucleotides

Bulged bases

2UXB|1|A|U|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2UXB_017 not in the Motif Atlas

Homologous match to HL_4LFB_017

Geometric discrepancy: 0.1055

The information below is about HL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

2UXB|1|A|G|786
2UXB|1|A|A|787
2UXB|1|A|U|788
2UXB|1|A|U|789
2UXB|1|A|A|790
2UXB|1|A|G|791
2UXB|1|A|A|792
2UXB|1|A|U|793
2UXB|1|A|A|794
2UXB|1|A|C|795
2UXB|1|A|C|796

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain G

RIBOSOMAL PROTEIN S7

Chain K

RIBOSOMAL PROTEIN S11