HL_2UXD_021

3D structure

PDB id

2UXD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA CGGG in the context of the Thermus thermophilus 30S subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAAGCAACGC

Length

10 nucleotides

Bulged bases

2UXD|1|A|G|971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2UXD_021 not in the Motif Atlas

Homologous match to HL_4LFB_021

Geometric discrepancy: 0.1234

The information below is about HL_4LFB_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

2UXD|1|A|G|963
2UXD|1|A|A|964
2UXD|1|A|A|965
2UXD|1|A|G|966
2UXD|1|A|C|967
2UXD|1|A|A|968
2UXD|1|A|A|969
2UXD|1|A|C|970
2UXD|1|A|G|971
2UXD|1|A|C|972

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain G

RIBOSOMAL PROTEIN S7

Chain I

RIBOSOMAL PROTEIN S9

Chain J

RIBOSOMAL PROTEIN S10

Chain M

RIBOSOMAL PROTEIN S13

Chain Y

A-SITE MESSENGER RNA FRAGMENT CGGG