3D structure

PDB id
2UXD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA CGGG in the context of the Thermus thermophilus 30S subunit.
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GAAGCAACGC
Length
10 nucleotides
Bulged bases
2UXD|1|A|G|971
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_2UXD_021 not in the Motif Atlas
Homologous match to HL_4LFB_021
Geometric discrepancy: 0.1234
The information below is about HL_4LFB_021
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_50779.4
Basepair signature
cWW-F-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

2UXD|1|A|G|963
2UXD|1|A|A|964
2UXD|1|A|A|965
2UXD|1|A|G|966
2UXD|1|A|C|967
2UXD|1|A|A|968
2UXD|1|A|A|969
2UXD|1|A|C|970
2UXD|1|A|G|971
2UXD|1|A|C|972

Current chains

Chain A
16S RIBOSOMAL RNA

Nearby chains

Chain G
RIBOSOMAL PROTEIN S7
Chain I
RIBOSOMAL PROTEIN S9
Chain J
RIBOSOMAL PROTEIN S10
Chain M
RIBOSOMAL PROTEIN S13
Chain Y
A-SITE MESSENGER RNA FRAGMENT CGGG

Coloring options:


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