HL_2YKR_006

3D structure

PDB id

2YKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit with RsgA bound in the presence of GMPPNP

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

GGGUAACGGCU

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2YKR_006 not in the Motif Atlas

Geometric match to HL_3TUP_001

Geometric discrepancy: 0.3774

The information below is about HL_3TUP_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_45175.1

Basepair signature

cWW-cWS-F-F

Number of instances in this motif group

5

Unit IDs

2YKR|1|A|G|258
2YKR|1|A|G|259
2YKR|1|A|G|260
2YKR|1|A|U|261
2YKR|1|A|A|262
2YKR|1|A|A|263
2YKR|1|A|C|264
2YKR|1|A|G|265
2YKR|1|A|G|266
2YKR|1|A|C|267
2YKR|1|A|U|268

Current chains

Chain A

16S RRNA

Nearby chains

Chain Q

30S RIBOSOMAL PROTEIN S17

Chain T

30S RIBOSOMAL PROTEIN S20