HL_2YKR_015

3D structure

PDB id

2YKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit with RsgA bound in the presence of GMPPNP

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

CGGUGAAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2YKR_015 not in the Motif Atlas

Homologous match to HL_5J7L_015

Geometric discrepancy: 0.3121

The information below is about HL_5J7L_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

2YKR|1|A|C|689
2YKR|1|A|G|690
2YKR|1|A|G|691
2YKR|1|A|U|692
2YKR|1|A|G|693
2YKR|1|A|A|694
2YKR|1|A|A|695
2YKR|1|A|A|696
2YKR|1|A|U|697
2YKR|1|A|G|698

Current chains

Chain A

16S RRNA

Nearby chains

Chain K

30S RIBOSOMAL PROTEIN S11

Chain U

30S RIBOSOMAL PROTEIN S21