HL_2YKR_025

3D structure

PDB id

2YKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit with RsgA bound in the presence of GMPPNP

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

2YKR|1|A|G|1094

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2YKR_025 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.5875

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

2YKR|1|A|G|1089
2YKR|1|A|U|1090
2YKR|1|A|U|1091
2YKR|1|A|A|1092
2YKR|1|A|A|1093
2YKR|1|A|G|1094
2YKR|1|A|U|1095
2YKR|1|A|C|1096

Current chains

Chain A

16S RRNA

Nearby chains

Chain B

30S RIBOSOMAL PROTEIN S2

Chain E

30S RIBOSOMAL PROTEIN S5

Chain G

30S RIBOSOMAL PROTEIN S7