HL_2YKR_028

3D structure

PDB id

2YKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit with RsgA bound in the presence of GMPPNP

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2YKR_028 not in the Motif Atlas

Homologous match to HL_4LFB_028

Geometric discrepancy: 0.407

The information below is about HL_4LFB_028

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

2YKR|1|A|C|1265
2YKR|1|A|G|1266
2YKR|1|A|C|1267
2YKR|1|A|G|1268
2YKR|1|A|A|1269
2YKR|1|A|G|1270

Current chains

Chain A

16S RRNA

Nearby chains

Chain M

30S RIBOSOMAL PROTEIN S13

Chain S

30S RIBOSOMAL PROTEIN S19