HL_2ZJP_064

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

2ZJP|1|X|G|2731, 2ZJP|1|X|C|2735

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2ZJP_064 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.1637

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

2ZJP|1|X|C|2725
2ZJP|1|X|U|2726
2ZJP|1|X|G|2727
2ZJP|1|X|A|2728
2ZJP|1|X|A|2729
2ZJP|1|X|A|2730
2ZJP|1|X|G|2731
2ZJP|1|X|C|2732
2ZJP|1|X|A|2733
2ZJP|1|X|U|2734
2ZJP|1|X|C|2735
2ZJP|1|X|U|2736
2ZJP|1|X|A|2737
2ZJP|1|X|A|2738
2ZJP|1|X|G|2739

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain 4

50S RIBOSOMAL PROTEIN L36

Chain E

50S RIBOSOMAL PROTEIN L6