HL_3B0V_004

3D structure

PDB id

3B0V (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA-dihydrouridine synthase from Thermus thermophilus in complex with tRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.51 Å

Loop

Sequence

CAGUUGG(H2U)AG

Length

10 nucleotides

Bulged bases

3B0V|1|B|U|16, 3B0V|1|B|U|17, 3B0V|1|B|G|18, 3B0V|1|B|G|19

QA status

Modified nucleotides: H2U

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3B0V_004 not in the Motif Atlas

Geometric match to HL_7LYF_001

Geometric discrepancy: 0.2759

The information below is about HL_7LYF_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

3B0V|1|B|C|13
3B0V|1|B|A|14
3B0V|1|B|G|15
3B0V|1|B|U|16
3B0V|1|B|U|17
3B0V|1|B|G|18
3B0V|1|B|G|19
3B0V|1|B|H2U|20
3B0V|1|B|A|21
3B0V|1|B|G|22

Current chains

Chain B

tRNA

Nearby chains

Chain D

tRNA-dihydrouridine synthase