HL_3B0V_008

3D structure

PDB id

3B0V (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA-dihydrouridine synthase from Thermus thermophilus in complex with tRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.51 Å

Loop

Sequence

UCAGUUGG(H2U)AGA

Length

12 nucleotides

Bulged bases

3B0V|1|B|U|16, 3B0V|1|B|U|17, 3B0V|1|B|G|18, 3B0V|1|B|G|19, 3B0V|1|B|H2U|20

QA status

Modified nucleotides: H2U

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3B0V_008 not in the Motif Atlas

Homologous match to HL_6ORD_220

Geometric discrepancy: 0.458

The information below is about HL_6ORD_220

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_96927.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

3

Unit IDs

3B0V|1|B|U|12
3B0V|1|B|C|13
3B0V|1|B|A|14
3B0V|1|B|G|15
3B0V|1|B|U|16
3B0V|1|B|U|17
3B0V|1|B|G|18
3B0V|1|B|G|19
3B0V|1|B|H2U|20
3B0V|1|B|A|21
3B0V|1|B|G|22
3B0V|1|B|A|23

Current chains

Chain B

tRNA

Nearby chains

Chain D

tRNA-dihydrouridine synthase