HL_3B0V_010

3D structure

PDB id

3B0V (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA-dihydrouridine synthase from Thermus thermophilus in complex with tRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.51 Å

Loop

Sequence

GUUCGAUUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3B0V_010 not in the Motif Atlas

Homologous match to HL_4YCP_003

Geometric discrepancy: 0.2507

The information below is about HL_4YCP_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

96

Unit IDs

3B0V|1|A|G|53
3B0V|1|A|U|54
3B0V|1|A|U|55
3B0V|1|A|C|56
3B0V|1|A|G|57
3B0V|1|A|A|58
3B0V|1|A|U|59
3B0V|1|A|U|60
3B0V|1|A|C|61

Current chains

Chain A

tRNA

Nearby chains

Chain C

tRNA-dihydrouridine synthase