HL_3BBX_023

3D structure

PDB id

3BBX (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

10 Å

Loop

Sequence

UGUUGAAAAA

Length

10 nucleotides

Bulged bases

3BBX|1|B|U|747, 3BBX|1|B|A|751, 3BBX|1|B|A|752

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3BBX_023 not in the Motif Atlas

Homologous match to HL_4WF9_023

Geometric discrepancy: 0.1068

The information below is about HL_4WF9_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50204.1

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

11

Unit IDs

3BBX|1|B|U|744
3BBX|1|B|G|745
3BBX|1|B|U|746
3BBX|1|B|U|747
3BBX|1|B|G|748
3BBX|1|B|A|749
3BBX|1|B|A|750
3BBX|1|B|A|751
3BBX|1|B|A|752
3BBX|1|B|A|753

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain D

50S ribosomal protein L3

Chain S

50S ribosomal protein L22