3D structure

PDB id
3BBX (explore in PDB, NAKB, or RNA 3D Hub)
Description
The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex
Experimental method
ELECTRON MICROSCOPY
Resolution
10 Å

Loop

Sequence
UGCUAACG
Length
8 nucleotides
Bulged bases
3BBX|1|B|U|958, 3BBX|1|B|C|961
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_3BBX_027 not in the Motif Atlas
Homologous match to HL_4WF9_027
Geometric discrepancy: 0.1473
The information below is about HL_4WF9_027
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

3BBX|1|B|U|955
3BBX|1|B|G|956
3BBX|1|B|C|957
3BBX|1|B|U|958
3BBX|1|B|A|959
3BBX|1|B|A|960
3BBX|1|B|C|961
3BBX|1|B|G|962

Current chains

Chain B
23S ribosomal RNA

Nearby chains

Chain A
5S ribosomal RNA; 5S rRNA
Chain M
50S ribosomal protein L16

Coloring options:


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