HL_3BBX_027

3D structure

PDB id

3BBX (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

10 Å

Loop

Sequence

UGCUAACG

Length

8 nucleotides

Bulged bases

3BBX|1|B|U|958, 3BBX|1|B|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3BBX_027 not in the Motif Atlas

Homologous match to HL_4WF9_027

Geometric discrepancy: 0.1473

The information below is about HL_4WF9_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

3BBX|1|B|U|955
3BBX|1|B|G|956
3BBX|1|B|C|957
3BBX|1|B|U|958
3BBX|1|B|A|959
3BBX|1|B|A|960
3BBX|1|B|C|961
3BBX|1|B|G|962

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain A

5S ribosomal RNA; 5S rRNA

Chain M

50S ribosomal protein L16