HL_3BBX_046

3D structure

PDB id

3BBX (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

10 Å

Loop

Sequence

UUUAUUAAAAA

Length

11 nucleotides

Bulged bases

3BBX|1|B|A|1780, 3BBX|1|B|U|1781, 3BBX|1|B|U|1782, 3BBX|1|B|A|1786

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3BBX_046 not in the Motif Atlas

Homologous match to HL_4WF9_043

Geometric discrepancy: 0.0926

The information below is about HL_4WF9_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87681.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

3BBX|1|B|U|1777
3BBX|1|B|U|1778
3BBX|1|B|U|1779
3BBX|1|B|A|1780
3BBX|1|B|U|1781
3BBX|1|B|U|1782
3BBX|1|B|A|1783
3BBX|1|B|A|1784
3BBX|1|B|A|1785
3BBX|1|B|A|1786
3BBX|1|B|A|1787

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2