HL_3BBX_048

3D structure

PDB id

3BBX (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

10 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

3BBX|1|B|C|1870

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3BBX_048 not in the Motif Atlas

Homologous match to HL_5J7L_180

Geometric discrepancy: 0.3839

The information below is about HL_5J7L_180

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

3BBX|1|B|C|1868
3BBX|1|B|G|1869
3BBX|1|B|C|1870
3BBX|1|B|A|1871
3BBX|1|B|A|1872
3BBX|1|B|G|1873

Current chains

Chain B

23S ribosomal RNA

Nearby chains