HL_3BBX_057

3D structure

PDB id

3BBX (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

10 Å

Loop

Sequence

UGCAAUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3BBX_057 not in the Motif Atlas

Homologous match to HL_5J7L_189

Geometric discrepancy: 0.1562

The information below is about HL_5J7L_189

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

3BBX|1|B|U|2324
3BBX|1|B|G|2325
3BBX|1|B|C|2326
3BBX|1|B|A|2327
3BBX|1|B|A|2328
3BBX|1|B|U|2329
3BBX|1|B|G|2330
3BBX|1|B|G|2331

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L33

Chain W

50S ribosomal protein L27