HL_3BBX_067

3D structure

PDB id

3BBX (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

10 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

3BBX|1|B|G|2751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3BBX_067 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.1169

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

3BBX|1|B|C|2745
3BBX|1|B|U|2746
3BBX|1|B|G|2747
3BBX|1|B|A|2748
3BBX|1|B|A|2749
3BBX|1|B|A|2750
3BBX|1|B|G|2751
3BBX|1|B|C|2752
3BBX|1|B|A|2753
3BBX|1|B|U|2754
3BBX|1|B|C|2755
3BBX|1|B|U|2756
3BBX|1|B|A|2757
3BBX|1|B|A|2758
3BBX|1|B|G|2759

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain G

50S ribosomal protein L6