HL_3CCR_047

3D structure

PDB id

3CCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation A2488C. Density for anisomycin is visible but not included in the model.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UCUAGUAACAA

Length

11 nucleotides

Bulged bases

3CCR|1|0|A|1836, 3CCR|1|0|G|1837, 3CCR|1|0|U|1838, 3CCR|1|0|A|1842

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3CCR_047 not in the Motif Atlas

Homologous match to HL_4V9F_047

Geometric discrepancy: 0.091

The information below is about HL_4V9F_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87681.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

3CCR|1|0|U|1833
3CCR|1|0|C|1834
3CCR|1|0|U|1835
3CCR|1|0|A|1836
3CCR|1|0|G|1837
3CCR|1|0|U|1838
3CCR|1|0|A|1839
3CCR|1|0|A|1840
3CCR|1|0|C|1841
3CCR|1|0|A|1842
3CCR|1|0|A|1843

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 1

50S ribosomal protein L37e

Chain A

50S ribosomal protein L2P