HL_3CD6_047
3D structure
- PDB id
- 3CD6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-cystal of large Ribosomal Subunit mutant G2616A with CC-Puromycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.75 Å
Loop
- Sequence
- UCUAGUAACAA
- Length
- 11 nucleotides
- Bulged bases
- 3CD6|1|0|A|1836, 3CD6|1|0|G|1837, 3CD6|1|0|U|1838, 3CD6|1|0|A|1842
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3CD6_047 not in the Motif Atlas
- Homologous match to HL_4V9F_047
- Geometric discrepancy: 0.0545
- The information below is about HL_4V9F_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_87681.1
- Basepair signature
- cWW-cWW-tWH-F-tWH-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
3CD6|1|0|U|1833
3CD6|1|0|C|1834
3CD6|1|0|U|1835
3CD6|1|0|A|1836
3CD6|1|0|G|1837
3CD6|1|0|U|1838
3CD6|1|0|A|1839
3CD6|1|0|A|1840
3CD6|1|0|C|1841
3CD6|1|0|A|1842
3CD6|1|0|A|1843
Current chains
- Chain 0
- 23S RIBOSOMAL RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L37e
- Chain A
- 50S ribosomal protein L2P
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