HL_3CF5_065

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

3CF5|1|X|G|2731, 3CF5|1|X|C|2735

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3CF5_065 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.1537

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

3CF5|1|X|C|2725
3CF5|1|X|U|2726
3CF5|1|X|G|2727
3CF5|1|X|A|2728
3CF5|1|X|A|2729
3CF5|1|X|A|2730
3CF5|1|X|G|2731
3CF5|1|X|C|2732
3CF5|1|X|A|2733
3CF5|1|X|U|2734
3CF5|1|X|C|2735
3CF5|1|X|U|2736
3CF5|1|X|A|2737
3CF5|1|X|A|2738
3CF5|1|X|G|2739

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain 4

50S RIBOSOMAL PROTEIN L36

Chain E

50S RIBOSOMAL PROTEIN L6