HL_3CMA_032

3D structure

PDB id

3CMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCA and CCA-Phe-Cap-Bio bound to the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

ACUCAUACU

Length

9 nucleotides

Bulged bases

3CMA|1|0|U|1279

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3CMA_032 not in the Motif Atlas

Homologous match to HL_4V9F_032

Geometric discrepancy: 0.0624

The information below is about HL_4V9F_032

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_68642.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

3CMA|1|0|A|1274
3CMA|1|0|C|1275
3CMA|1|0|U|1276
3CMA|1|0|C|1277
3CMA|1|0|A|1278
3CMA|1|0|U|1279
3CMA|1|0|A|1280
3CMA|1|0|C|1281
3CMA|1|0|U|1282

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain O

50S ribosomal protein L18e

Chain Y

50S ribosomal protein L32e