HL_3CXC_032

3D structure

PDB id

3CXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of an enhanced oxazolidinone inhibitor bound to the 50S ribosomal subunit of H. marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

ACUCAUACU

Length

9 nucleotides

Bulged bases

3CXC|1|0|U|1279

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3CXC_032 not in the Motif Atlas

Homologous match to HL_4V9F_032

Geometric discrepancy: 0.0486

The information below is about HL_4V9F_032

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_87306.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

3CXC|1|0|A|1274
3CXC|1|0|C|1275
3CXC|1|0|U|1276
3CXC|1|0|C|1277
3CXC|1|0|A|1278
3CXC|1|0|U|1279
3CXC|1|0|A|1280
3CXC|1|0|C|1281
3CXC|1|0|U|1282

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain N

RIBOSOMAL PROTEIN L18E

Chain X

RIBOSOMAL PROTEIN L32E