HL_3CXC_047

3D structure

PDB id

3CXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of an enhanced oxazolidinone inhibitor bound to the 50S ribosomal subunit of H. marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UCUAGUAACAA

Length

11 nucleotides

Bulged bases

3CXC|1|0|A|1836, 3CXC|1|0|G|1837, 3CXC|1|0|U|1838, 3CXC|1|0|A|1842

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3CXC_047 not in the Motif Atlas

Homologous match to HL_4V9F_047

Geometric discrepancy: 0.0596

The information below is about HL_4V9F_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87681.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

3CXC|1|0|U|1833
3CXC|1|0|C|1834
3CXC|1|0|U|1835
3CXC|1|0|A|1836
3CXC|1|0|G|1837
3CXC|1|0|U|1838
3CXC|1|0|A|1839
3CXC|1|0|A|1840
3CXC|1|0|C|1841
3CXC|1|0|A|1842
3CXC|1|0|A|1843

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain A

RIBOSOMAL PROTEIN L2

Chain Z

RIBOSOMAL PROTEIN L37E