HL_3DEG_003

3D structure

PDB id

3DEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of elongating Escherichia coli 70S ribosome and EF4(LepA)-GMPPNP

Experimental method

ELECTRON MICROSCOPY

Resolution

10.9 Å

Loop

Sequence

G(5MU)(PSU)CG(1MA)UCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3DEG_003 not in the Motif Atlas

Homologous match to HL_6CFJ_108

Geometric discrepancy: 0.114

The information below is about HL_6CFJ_108

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

96

Unit IDs

3DEG|1|A|G|53
3DEG|1|A|5MU|54
3DEG|1|A|PSU|55
3DEG|1|A|C|56
3DEG|1|A|G|57
3DEG|1|A|1MA|58
3DEG|1|A|U|59
3DEG|1|A|C|60
3DEG|1|A|C|61

Current chains

Chain A

A/L-tRNA

Nearby chains

Chain H

50S ribosomal protein L11