HL_3DEG_004

3D structure

PDB id

3DEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of elongating Escherichia coli 70S ribosome and EF4(LepA)-GMPPNP

Experimental method

ELECTRON MICROSCOPY

Resolution

10.9 Å

Loop

Sequence

CAGCCUGGUAG

Length

11 nucleotides

Bulged bases

3DEG|1|B|C|16, 3DEG|1|B|C|17, 3DEG|1|B|U|17|||A, 3DEG|1|B|G|18, 3DEG|1|B|G|19, 3DEG|1|B|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3DEG_004 not in the Motif Atlas

Homologous match to HL_5B63_003

Geometric discrepancy: 0.1603

The information below is about HL_5B63_003

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

3DEG|1|B|C|13
3DEG|1|B|A|14
3DEG|1|B|G|15
3DEG|1|B|C|16
3DEG|1|B|C|17
3DEG|1|B|U|17|||A
3DEG|1|B|G|18
3DEG|1|B|G|19
3DEG|1|B|U|20
3DEG|1|B|A|21
3DEG|1|B|G|22

Current chains

Chain B

P-tRNA

Nearby chains