HL_3DEG_005

3D structure

PDB id

3DEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of elongating Escherichia coli 70S ribosome and EF4(LepA)-GMPPNP

Experimental method

ELECTRON MICROSCOPY

Resolution

10.9 Å

Loop

Sequence

GCUCAUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3DEG_005 not in the Motif Atlas

Homologous match to HL_5E81_212

Geometric discrepancy: 0.1205

The information below is about HL_5E81_212

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.5

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

50

Unit IDs

3DEG|1|B|G|31
3DEG|1|B|C|32
3DEG|1|B|U|33
3DEG|1|B|C|34
3DEG|1|B|A|35
3DEG|1|B|U|36
3DEG|1|B|A|37
3DEG|1|B|A|38
3DEG|1|B|C|39

Current chains

Chain B

P-tRNA

Nearby chains