HL_3DEG_009

3D structure

PDB id

3DEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of elongating Escherichia coli 70S ribosome and EF4(LepA)-GMPPNP

Experimental method

ELECTRON MICROSCOPY

Resolution

10.9 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

3DEG|1|G|A|1070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3DEG_009 not in the Motif Atlas

Homologous match to HL_6PRV_001

Geometric discrepancy: 0.1088

The information below is about HL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

3DEG|1|G|C|1064
3DEG|1|G|U|1065
3DEG|1|G|U|1066
3DEG|1|G|A|1067
3DEG|1|G|G|1068
3DEG|1|G|A|1069
3DEG|1|G|A|1070
3DEG|1|G|G|1071
3DEG|1|G|C|1072
3DEG|1|G|A|1073
3DEG|1|G|G|1074

Current chains

Chain G

50S RNA helix 42-44

Nearby chains

Chain C

GTP-binding protein lepA

Chain H

50S ribosomal protein L11