HL_3DEG_010

3D structure

PDB id

3DEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of elongating Escherichia coli 70S ribosome and EF4(LepA)-GMPPNP

Experimental method

ELECTRON MICROSCOPY

Resolution

10.9 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3DEG_010 not in the Motif Atlas

Homologous match to HL_6PRV_002

Geometric discrepancy: 0.1133

The information below is about HL_6PRV_002

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.1

Basepair signature

cWW-F

Number of instances in this motif group

10

Unit IDs

3DEG|1|G|C|1092
3DEG|1|G|G|1093
3DEG|1|G|U|1094
3DEG|1|G|A|1095
3DEG|1|G|A|1096
3DEG|1|G|U|1097
3DEG|1|G|A|1098
3DEG|1|G|G|1099

Current chains

Chain G

50S RNA helix 42-44

Nearby chains

Chain C

GTP-binding protein lepA

Chain H

50S ribosomal protein L11